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75 entries « 2 of 2 »

2017

Xie, Z. X.; Liu, D.; Li, B. Z.; Zhao, M.; Zeng, B. X.; Wu, Y.; Shen, Y.; Lin, T.; Yang, P.; Cai, Y.; Dai, J.; Yang, H.; Yuan, Y. J.

Design and chemical synthesis of eukaryotic chromosomes Journal Article

In: Chemical Society Reviews, vol. 46, pp. 7191–7207, 2017.

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Zhang, W.; Zhao, G.; Luo, Z.; Lin, Y.; Wang, L.; Guo, Y.; Wang, A.; Jiang, S.; Jiang, Q.; Wang, Y.; Gong, J.; Hou, S.; Huang, J.; Li, T.; Qin, Y.; Dong, J.; Qin, Q.; Zhang, J.; Zou, X.; Zhao, L.; He, X.; Xiao, Y.; Xu, M.; Cheng, E.; Huang, N.; Zhou, T.; Shen, Y.; Walker, R.; Luo, Y.; Kuang, Z.; Mitchell, L. A.; Yang, K.; Richardson, S. M.; Wu, Y.; Li, B. Z.; Yuan, Y. J.; Lin, J.; Yang, H.; Chen, G. Q.; Wu, Q.; Bader, J. S.; Cai, Y.; Boeke, J. D.; Dai, J.

Engineering the ribosomal DNA in a megabase synthetic chromosome Journal Article

In: Science, vol. 355, no. 6329, 2017.

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2016

Boeke, J. D.; Church, G.; Hessel, A.; Kelley, N. J.; Arkin, A.; Cai, Y.; Carlson, R.; Cornish, V. W.; Chakravarti, A.; Holt, L.; Isaacs, F. J.; Kuiken, T.; Lajoie, M.; Lessor, T.; Maurano, M. T.; Lunshof, J.; Mitchell, L. A.; Rine, J.; Rosser, S.; Sanjana, N. E.; Silver, P. A.; Valle, D.; Wang, H.; Way, J. C.; Yang, L.

GENOME ENGINEERING. The Genome Project-Write Journal Article

In: Science, vol. 353, no. 6329, pp. 126–127, 2016.

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Ellis, T.; Cai, Y.

Synthetic Biology in Europe Journal Article

In: ACS Synthetic Biology, vol. 5, no. 10, pp. 1033, 2016.

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Kanigowska, P.; Shen, Y.; Zheng, Y.; Rosser, S.; Cai, Y.

Smart DNA Fabrication Using Sound Waves: Applying Acoustic Dispensing Technologies to Synthetic Biology Journal Article

In: Journal of Laboratory Automation, vol. 21, no. 1, pp. 49–56, 2016.

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Martella, A.; Pollard, S. M.; Dai, J.; Cai, Y.

Mammalian Synthetic Biology: Time for Big MACs Journal Article

In: ACS Synthetic Biology, vol. 5, no. 10, pp. 1040–1049, 2016.

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Qin, Y.; Tan, C.; Lin, J.; Qin, Q.; He, J.; Wu, Q.; Cai, Y.; Chen, Z.; Dai, J.

EcoExpress-Highly Efficient Construction and Expression of Multicomponent Protein Complexes in Escherichia coli Journal Article

In: ACS Synthetic Biology, vol. 5, no. 11, pp. 1239–1246, 2016.

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Shen, Y.; Stracquadanio, G.; Wang, Y.; Yang, K.; Mitchell, L. A.; Xue, Y.; Cai, Y.; Chen, T.; Dymond, J. S.; Kang, K.; Gong, J.; Zeng, X.; Zhang, Y.; Li, Y.; Feng, Q.; Xu, X.; Wang, J.; Wang, J.; Yang, H.; Boeke, J. D.; Bader, J. S.

SCRaMbLE generates designed combinatorial stochastic diversity in synthetic chromosomes Journal Article

In: Genome Research, vol. 26, no. 1, pp. 36–49, 2016.

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Walker, R. S.; Cai, Y.

The Fifth Annual Sc2.0 and Synthetic Genomes Conference: Synthetic Genomes in High Gear Journal Article

In: ACS Synthetic Biology, vol. 5, no. 9, pp. 920–922, 2016.

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2015

Agmon, N.; Mitchell, L. A.; Cai, Y.; Ikushima, S.; Chuang, J.; Zheng, A.; Choi, W. J.; Martin, J. A.; Caravelli, K.; Stracquadanio, G.; Boeke, J. D.

Yeast Golden Gate (yGG) for the Efficient Assembly of S. cerevisiae Transcription Units Journal Article

In: ACS Synthetic Biology, vol. 4, no. 7, pp. 853–859, 2015.

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Cai, Y.; Agmon, N.; Choi, W. J.; Ubide, A.; Stracquadanio, G.; Caravelli, K.; Hao, H.; S.Bader, J.; Boeke, J. D.

Intrinsic biocontainment: multiplex genome safeguards combine transcriptional and recombinational control of essential yeast genes Journal Article

In: Proceedings of the National Academy of Sciences, vol. 112, no. 6, pp. 1803–1808, 2015.

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Guo, Y.; Dong, J.; Zhou, T.; Auxillos, J.; Li, T.; Zhang, W.; Wang, L.; Shen, Y.; Luo, Y.; Lin, J.; Y.Zheng,; Chen, G. Q.; Wu, Q.; Cai, Y.; Dai, J.

YeastFab: the design and construction of standard biological parts for metabolic engineering in Saccharomyces cerevisiae Journal Article

In: Nucleic Acids Research, vol. 43, no. 13, pp. e88, 2015.

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Mitchell, L. A.; Chuang, J.; Agmon, N.; Khunsriraksakul, C.; Phillips, N. A.; Cai, Y.; Truong, D. M.; Veerakumar, A.; Wang, Y.; Mayorga, M.; Blomquist, P.; Sadda, P.; Trueheart, J.; Boeke, J. D.

Versatile genetic assembly system (VEGAS) to assemble pathways for expression in S. cerevisiae Journal Article

In: Nucleic Acids Research, vol. 43, no. 13, pp. 6620–6630, 2015.

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Quinn, J. Y.; Cox, R. S.; Adler, A.; Beal, J.; Bhatia, S.; Cai, Y.; Chen, J.; Clancy, K.; Galdzicki, M.; Hillson, N. J.; Novère, N. Le; Maheshwari, A. J.; McLaughlin, J. A.; Myers, C. J.; P, U.; Pocock, M.; Rodriguez, C.; Soldatova, L.; Stan, G. B.; Swainston, N.; Wipat, A.; Sauro, H. M.

SBOL Visual: A Graphical Language for Genetic Designs Journal Article

In: vol. 13, no. 12, pp. e1002310, 2015.

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2014

Annaluru, N.; Muller, H.; Mitchell, L. A.; Ramalingam, S.; Stracquadanio, G.; M.Richardson, S.; Dymond, J. S.; Kuang, Z.; Scheifele, L. Z.; Cooper, E. M.; Cai, Y.; Zeller, K.; Agmon, N.; Han, J. S.; Hadjithomas, M.; Tullman, J.; Caravelli, K.; Cirelli, K.; Guo, Z.; Yeluru, A.; London, V.; Murugan, S.; Kandavelou, K.; Agier, N.; Fischer, G.; Yang, K.; Martin, J. A.; Bilgel, M.; Bohutski, P.; Boulier, K. M.; Capaldo, B. J.; Chang, J.; Charoen, K.; Choi, W. J.; Deng, P.; DiCarlo, J. E.; Doong, J.; Dunn, J.; Feinberg, J. I.; Fernandez, C.; Floria, C. E.; Gladowski, D.; Hadidi, P.; Ishizuka, I.; Jabbari, J.; Lau, C. Y.; Lee, P. A.; S.Li, D. Lin; Linder, M. E.; Ling, J.; Liu, J.; Liu, J.; London, M.; Ma, H.; Mao, J.; E.McDade, J.; McMillan, A.; Moore, A. M.; Oh, W. C.; Ouyang, Y.; Patel, R.; Paul, M.; C.Paulsen, L.; Qiu, J.; Rhee, A.; Rubashkin, M. G.; Soh, I. Y.; Sotuyo, N. E.; Srinivas, V.; Wong, A.; Suarez, A.; Wong, R.; Xie, W. R.; Xu, Y.; Yu, A. T.; Koszul, R.; Bader, J. S.; D.Boeke, J.; Chandrasegaran, S.

Total synthesis of a functional designer eukaryotic chromosome Journal Article

In: Science, vol. 344, no. 6179, pp. 55–58, 2014.

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Cai, Y.; Ellis, T.

The Sixth International Meeting on Synthetic Biology (SB6.0) special issue editorial Journal Article

In: ACS Synthetic Biology, vol. 3, no. 3, pp. 107, 2014.

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Trubitsyna, M.; Michlewski, G.; Cai, Y.; Elfick, A.; French, C. E.

PaperClip: rapid multi-part DNA assembly from existing libraries Journal Article

In: Nucleic Acids Res, vol. 42, no. 20, pp. e154, 2014.

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2013

Mitchell, L. A.; Cai, Y.; Taylor, M.; Noronha, A. M.; Chuang, J.; Dai, L.; Boeke, J. D.

Multichange isothermal mutagenesis: a new strategy for multiple site-directed mutations in plasmid DNA Journal Article

In: ACS Synthetic Biology, vol. 2, no. 8, pp. 473–477, 2013.

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Wilson, M. L.; Cai, Y.; Hanlon, R.; Taylor, S.; Chevreux, B.; Setubal, J. C.; Tyler, B. M.; Peccoud, J.

Sequence verification of synthetic DNA by assembly of sequencing reads Journal Article

In: Nucleic Acids Research, vol. 41, no. 1, pp. e25, 2013.

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2011

Cai, Y.; Boeke, J. D.

Genome remodeling Journal Article

In: Nature Biotechnology, vol. 29, no. 9, pp. 807–808, 2011.

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2010

Cai, Y.; Wilson, M. L.; Peccoud, J.

GenoCAD for iGEM: a grammatical approach to the design of standard-compliant constructs Journal Article

In: Nucleic Acids Research, vol. 38, no. 8, pp. 2637–2644, 2010.

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2009

Cai, Y.; Lux, M. W.; Adam, L.; Peccoud, J.

Modeling Structure-Function Relationships in Synthetic DNA Sequences using Attribute Grammars Journal Article

In: PLoS Computational Biology, vol. 5, no. 10, 2009.

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Czar, M. J.; Cai, Y.; Peccoud, J.

Writing DNA with GenoCAD Journal Article

In: Nucleic Acids Research, vol. 37, pp. W40–W47, 2009.

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2008

Peccoud, J.; Blauvelt, M. F.; Cai, Y.; Cooper, K. L.; Crasta, O.; DeLalla, E. C.; Evans, C.; Folkerts, O.; Lyons, B. M.; Mane, S. P.; Shelton, R.; Sweede, M. A.; Waldon, S. A.

Targeted development of registries of biological parts Journal Article

In: PLoS ONE, vol. 3, no. 7, pp. e2671, 2008.

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2007

Cai, Y.; Hartnett, B.; Gustafsson, C.; Peccoud, J.

A syntactic model to design and verify synthetic genetic constructs derived from standard biological parts Journal Article

In: Bioinformatics, vol. 23, no. 20, pp. 2760–2767, 2007.

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75 entries « 2 of 2 »